HL_6GZ5_066

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_066 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.1799

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6GZ5|1|A2|U|4459
6GZ5|1|A2|U|4460
6GZ5|1|A2|G|4461
6GZ5|1|A2|U|4462
6GZ5|1|A2|U|4463
6GZ5|1|A2|C|4464
6GZ5|1|A2|A|4465

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3