HL_6GZ5_068

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_068 not in the Motif Atlas

Geometric match to HL_4V9F_020

Geometric discrepancy: 0.1056

The information below is about HL_4V9F_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6GZ5|1|A2|C|4565
6GZ5|1|A2|G|4566
6GZ5|1|A2|A|4567
6GZ5|1|A2|G|4568
6GZ5|1|A2|A|4569
6GZ5|1|A2|G|4570

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AH

ribosomal protein uL6

Chain AV

ribosomal protein uL14

Chain Ct

eukaryotic elongation factor 2 (eEF2)