HL_6GZ5_070

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6GZ5|1|A2|G|4656, 6GZ5|1|A2|C|4660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_070 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0784

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6GZ5|1|A2|C|4650
6GZ5|1|A2|U|4651
6GZ5|1|A2|G|4652
6GZ5|1|A2|A|4653
6GZ5|1|A2|A|4654
6GZ5|1|A2|C|4655
6GZ5|1|A2|G|4656
6GZ5|1|A2|C|4657
6GZ5|1|A2|C|4658
6GZ5|1|A2|U|4659
6GZ5|1|A2|C|4660
6GZ5|1|A2|U|4661
6GZ5|1|A2|A|4662
6GZ5|1|A2|A|4663
6GZ5|1|A2|G|4664

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AH

ribosomal protein uL6

Chain AO

ribosomal protein uL13

Chain Am

ribosomal protein eL40