HL_6GZ5_086

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

6GZ5|1|B1|C|325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_086 not in the Motif Atlas

Geometric match to HL_5TBW_005

Geometric discrepancy: 0.3413

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6GZ5|1|B1|C|322
6GZ5|1|B1|C|323
6GZ5|1|B1|C|324
6GZ5|1|B1|C|325
6GZ5|1|B1|C|326
6GZ5|1|B1|G|327
6GZ5|1|B1|U|328
6GZ5|1|B1|G|329

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AW

ribosomal protein eL24

Chain BG

ribosomal protein eS6