HL_6GZ5_090

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

6GZ5|1|B1|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_090 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.3713

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6GZ5|1|B1|C|462
6GZ5|1|B1|C|463
6GZ5|1|B1|A|464
6GZ5|1|B1|A|465
6GZ5|1|B1|G|466
6GZ5|1|B1|G|467

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AV

ribosomal protein uL14

Chain BG

ribosomal protein eS6