HL_6GZ5_097

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6GZ5|1|B1|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_097 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.348

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6GZ5|1|B1|U|820
6GZ5|1|B1|G|821
6GZ5|1|B1|U|822
6GZ5|1|B1|U|823
6GZ5|1|B1|C|824
6GZ5|1|B1|A|825
6GZ5|1|B1|A|826
6GZ5|1|B1|A|827
6GZ5|1|B1|G|828

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BJ

ribosomal protein uS4

Chain BY

ribosomal protein eS24