HL_6GZ5_098

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

6GZ5|1|B1|G|836, 6GZ5|1|B1|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_098 not in the Motif Atlas

Geometric match to HL_4V88_189

Geometric discrepancy: 0.398

The information below is about HL_4V88_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6GZ5|1|B1|C|833
6GZ5|1|B1|C|834
6GZ5|1|B1|C|835
6GZ5|1|B1|G|836
6GZ5|1|B1|A|837
6GZ5|1|B1|G|838
6GZ5|1|B1|C|839
6GZ5|1|B1|C|840
6GZ5|1|B1|G|841

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BY

ribosomal protein eS24