HL_6GZ5_103

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUUCCCAUG

Length

10 nucleotides

Bulged bases

6GZ5|1|B1|U|1114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_103 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1087

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6GZ5|1|B1|U|1112
6GZ5|1|B1|A|1113
6GZ5|1|B1|U|1114
6GZ5|1|B1|U|1115
6GZ5|1|B1|C|1116
6GZ5|1|B1|C|1117
6GZ5|1|B1|C|1118
6GZ5|1|B1|A|1119
6GZ5|1|B1|U|1120
6GZ5|1|B1|G|1121

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BB

ribosomal protein eS1

Chain Bb

ribosomal protein eS27