HL_6GZ5_119
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZ5_119 not in the Motif Atlas
- Homologous match to HL_5HR6_003
- Geometric discrepancy: 0.1685
- The information below is about HL_5HR6_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
6GZ5|1|Bv|G|53
6GZ5|1|Bv|U|54
6GZ5|1|Bv|U|55
6GZ5|1|Bv|C|56
6GZ5|1|Bv|G|57
6GZ5|1|Bv|A|58
6GZ5|1|Bv|A|59
6GZ5|1|Bv|A|60
6GZ5|1|Bv|C|61
Current chains
- Chain Bv
- P/P-site-tRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AI
- ribosomal protein uL16
- Chain AJ
- ribosomal protein uL5
- Chain Ao
- ribosomal protein eL42
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