HL_6GZ5_121
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACUGAAGAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZ5_121 not in the Motif Atlas
- Homologous match to HL_2AKE_002
- Geometric discrepancy: 0.4195
- The information below is about HL_2AKE_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_83632.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6GZ5|1|Bw|A|31
6GZ5|1|Bw|C|32
6GZ5|1|Bw|U|33
6GZ5|1|Bw|G|34
6GZ5|1|Bw|A|35
6GZ5|1|Bw|A|36
6GZ5|1|Bw|G|37
6GZ5|1|Bw|A|38
6GZ5|1|Bw|U|39
Current chains
- Chain Bw
- E/E-site-tRNA
Nearby chains
- Chain B1
- Small subunit ribosomal RNA; SSU rRNA
- Chain BF
- ribosomal protein uS7
- Chain BO
- ribosomal protein uS11
- Chain Bc
- ribosomal protein eS28
- Chain Bv
- Transfer RNA; tRNA
- Chain Bx
- mRNA
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