HL_6GZ5_122

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZ5_122 not in the Motif Atlas

Homologous match to HL_3WFS_003

Geometric discrepancy: 0.2297

The information below is about HL_3WFS_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

6GZ5|1|Bw|G|53
6GZ5|1|Bw|U|54
6GZ5|1|Bw|U|55
6GZ5|1|Bw|C|56
6GZ5|1|Bw|G|57
6GZ5|1|Bw|A|58
6GZ5|1|Bw|U|59
6GZ5|1|Bw|C|60
6GZ5|1|Bw|C|61

Current chains

Chain Bw

E/E-site-tRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain Au

ribosomal protein uL1