HL_6GZ5_126

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGCACGAAA

Length

10 nucleotides

Bulged bases

6GZ5|1|A2|C|1348, 6GZ5|1|A2|G|1349, 6GZ5|1|A2|C|1350, 6GZ5|1|A2|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|A2|U|1347
6GZ5|1|A2|C|1348
6GZ5|1|A2|G|1349
6GZ5|1|A2|C|1350
6GZ5|1|A2|A|1351
6GZ5|1|A2|C|1352
6GZ5|1|A2|G|1353
6GZ5|1|A2|A|1354
6GZ5|1|A2|A|1355
6GZ5|1|A2|A|1356

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

ribosomal protein uL4

Chain AL

ribosomal protein eL13

Chain AN

ribosomal protein eL15

Chain AY

ribosomal protein uL24