HL_6GZQ_009

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

6GZQ|1|A1|U|272, 6GZQ|1|A1|U|275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_009 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3593

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90617.5

Basepair signature

cWW-tSH

Number of instances in this motif group

6

Unit IDs

6GZQ|1|A1|G|270
6GZQ|1|A1|C|271
6GZQ|1|A1|U|272
6GZQ|1|A1|U|273
6GZQ|1|A1|G|274
6GZQ|1|A1|U|275
6GZQ|1|A1|C|276

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain H1

50S ribosomal protein L9

Chain W1

50S ribosomal protein L28