HL_6GZQ_014

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

6GZQ|1|A1|G|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_014 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.232

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6GZQ|1|A1|G|438
6GZQ|1|A1|G|439
6GZQ|1|A1|A|440
6GZQ|1|A1|C|441
6GZQ|1|A1|C|442
6GZQ|1|A1|A|443
6GZQ|1|A1|C|444
6GZQ|1|A1|C|445

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain K1

50S ribosomal protein L15

Chain W1

50S ribosomal protein L28