HL_6GZQ_017

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_017 not in the Motif Atlas

Geometric match to HL_4ZT0_004

Geometric discrepancy: 0.1728

The information below is about HL_4ZT0_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GZQ|1|A1|C|570
6GZQ|1|A1|G|571
6GZQ|1|A1|C|572
6GZQ|1|A1|A|573
6GZQ|1|A1|A|574
6GZQ|1|A1|G|575

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain Q1

50S ribosomal protein L21