HL_6GZQ_032

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_032 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.1993

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

6GZQ|1|A1|G|1329
6GZQ|1|A1|U|1330
6GZQ|1|A1|G|1331
6GZQ|1|A1|A|1332
6GZQ|1|A1|G|1333
6GZQ|1|A1|A|1334
6GZQ|1|A1|A|1335
6GZQ|1|A1|U|1336
6GZQ|1|A1|C|1337

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain M1

50S ribosomal protein L17

Chain R1

50S ribosomal protein L22