HL_6GZQ_033

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

6GZQ|1|A1|G|1373, 6GZQ|1|A1|U|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_033 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.2203

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6GZQ|1|A1|G|1372
6GZQ|1|A1|G|1373
6GZQ|1|A1|U|1374
6GZQ|1|A1|C|1375
6GZQ|1|A1|G|1376
6GZQ|1|A1|U|1377
6GZQ|1|A1|C|1378

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain M1

50S ribosomal protein L17

Chain R1

50S ribosomal protein L22