HL_6GZQ_035

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6GZQ|1|A1|A|1440, 6GZQ|1|A1|U|1444, 6GZQ|1|A1|U|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_035 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1874

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GZQ|1|A1|G|1437
6GZQ|1|A1|U|1438
6GZQ|1|A1|U|1439
6GZQ|1|A1|A|1440
6GZQ|1|A1|A|1441
6GZQ|1|A1|U|1442
6GZQ|1|A1|A|1443
6GZQ|1|A1|U|1444
6GZQ|1|A1|U|1445
6GZQ|1|A1|C|1446

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain S1

50S ribosomal protein L23