HL_6GZQ_036

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

6GZQ|1|A1|A|1502, 6GZQ|1|A1|U|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_036 not in the Motif Atlas

Homologous match to HL_7RQB_037

Geometric discrepancy: 0.2203

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6GZQ|1|A1|C|1501
6GZQ|1|A1|A|1502
6GZQ|1|A1|U|1503
6GZQ|1|A1|G|1504
6GZQ|1|A1|G|1505
6GZQ|1|A1|A|1506
6GZQ|1|A1|C|1507
6GZQ|1|A1|G|1508

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain M1

50S ribosomal protein L17