HL_6GZQ_040

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6GZQ|1|A1|A|1662, 6GZQ|1|A1|A|1664, 6GZQ|1|A1|A|1666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_040 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1858

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6GZQ|1|A1|C|1660
6GZQ|1|A1|G|1661
6GZQ|1|A1|A|1662
6GZQ|1|A1|C|1663
6GZQ|1|A1|A|1664
6GZQ|1|A1|C|1665
6GZQ|1|A1|A|1666
6GZQ|1|A1|G|1667

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain R1

50S ribosomal protein L22

Chain c1

50S ribosomal protein L34