3D structure

PDB id
6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
UGCAAG
Length
6 nucleotides
Bulged bases
6GZQ|1|A1|C|1899
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GZQ_047 not in the Motif Atlas
Homologous match to HL_7RQB_047
Geometric discrepancy: 0.3594
The information below is about HL_7RQB_047
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_35490.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
299

Unit IDs

6GZQ|1|A1|U|1897
6GZQ|1|A1|G|1898
6GZQ|1|A1|C|1899
6GZQ|1|A1|A|1900
6GZQ|1|A1|A|1901
6GZQ|1|A1|G|1902

Current chains

Chain A1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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