HL_6GZQ_056

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_056 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.1611

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6GZQ|1|A1|C|2338
6GZQ|1|A1|G|2339
6GZQ|1|A1|C|2340
6GZQ|1|A1|A|2341
6GZQ|1|A1|A|2342
6GZQ|1|A1|G|2343
6GZQ|1|A1|G|2344
6GZQ|1|A1|G|2345

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain F1

50S ribosomal protein L5

Chain L1

50S ribosomal protein L16

Chain V1

50S ribosomal protein L27