HL_6GZQ_059

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

6GZQ|1|A1|U|2420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_059 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1691

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

6GZQ|1|A1|C|2418
6GZQ|1|A1|G|2419
6GZQ|1|A1|U|2420
6GZQ|1|A1|G|2421
6GZQ|1|A1|U|2422
6GZQ|1|A1|G|2423
6GZQ|1|A1|G|2424
6GZQ|1|A1|A|2425
6GZQ|1|A1|A|2426
6GZQ|1|A1|G|2427

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain K1

50S ribosomal protein L15

Chain W1

50S ribosomal protein L28