HL_6GZQ_060

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_060 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.1894

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

6GZQ|1|A1|C|2485
6GZQ|1|A1|G|2486
6GZQ|1|A1|U|2487
6GZQ|1|A1|C|2488
6GZQ|1|A1|C|2489
6GZQ|1|A1|A|2490
6GZQ|1|A1|C|2491
6GZQ|1|A1|A|2492
6GZQ|1|A1|G|2493

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L16

Chain e1

50S ribosomal protein L36