HL_6GZQ_068

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

6GZQ|1|A1|A|2832

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_068 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.1708

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6GZQ|1|A1|G|2831
6GZQ|1|A1|A|2832
6GZQ|1|A1|A|2833
6GZQ|1|A1|G|2834
6GZQ|1|A1|A|2835
6GZQ|1|A1|C|2836
6GZQ|1|A1|C|2837
6GZQ|1|A1|A|2838
6GZQ|1|A1|C|2839

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L3

Chain M1

50S ribosomal protein L17

Chain O1

50S ribosomal protein L19