HL_6GZQ_070

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUUGAUCCUGG

Length

11 nucleotides

Bulged bases

6GZQ|1|A2|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_070 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1671

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31940.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6GZQ|1|A2|U|12
6GZQ|1|A2|U|13
6GZQ|1|A2|U|14
6GZQ|1|A2|G|15
6GZQ|1|A2|A|16
6GZQ|1|A2|U|17
6GZQ|1|A2|C|18
6GZQ|1|A2|C|19
6GZQ|1|A2|U|20
6GZQ|1|A2|G|21
6GZQ|1|A2|G|22

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain E2

30S ribosomal protein S5

Chain L2

30S ribosomal protein S12