HL_6GZQ_077

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

6GZQ|1|A2|C|325, 6GZQ|1|A2|G|326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_077 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1505

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6GZQ|1|A2|C|315
6GZQ|1|A2|A|316
6GZQ|1|A2|C|317
6GZQ|1|A2|U|318
6GZQ|1|A2|G|319
6GZQ|1|A2|A|320
6GZQ|1|A2|G|321
6GZQ|1|A2|A|322
6GZQ|1|A2|C|323
6GZQ|1|A2|A|324
6GZQ|1|A2|C|325
6GZQ|1|A2|G|326
6GZQ|1|A2|G|327
6GZQ|1|A2|G|328

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain P2

30S ribosomal protein S16

Chain T2

30S ribosomal protein S20