HL_6GZQ_082

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_082 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2881

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6GZQ|1|A2|C|505
6GZQ|1|A2|A|506
6GZQ|1|A2|G|507
6GZQ|1|A2|C|508
6GZQ|1|A2|C|509
6GZQ|1|A2|G|510

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain L2

30S ribosomal protein S12