HL_6GZQ_085

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_085 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.1529

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6GZQ|1|A2|C|709
6GZQ|1|A2|G|710
6GZQ|1|A2|A|711
6GZQ|1|A2|A|712
6GZQ|1|A2|G|713
6GZQ|1|A2|G|714

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain O2

30S ribosomal protein S15