HL_6GZQ_107

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6GZQ|1|A1|G|2264

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_107 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1961

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6GZQ|1|A1|C|2262
6GZQ|1|A1|U|2263
6GZQ|1|A1|G|2264
6GZQ|1|A1|G|2265
6GZQ|1|A1|G|2266
6GZQ|1|A1|G|2267
6GZQ|1|A1|C|2268
6GZQ|1|A1|G|2269
6GZQ|1|A1|G|2270

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L16

Chain V1

50S ribosomal protein L27