HL_6GZQ_118

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6GZQ|1|A1|G|2766, 6GZQ|1|A1|C|2770

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_118 not in the Motif Atlas

Homologous match to HL_9DFE_064

Geometric discrepancy: 0.1677

The information below is about HL_9DFE_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6GZQ|1|A1|C|2760
6GZQ|1|A1|U|2761
6GZQ|1|A1|G|2762
6GZQ|1|A1|A|2763
6GZQ|1|A1|A|2764
6GZQ|1|A1|A|2765
6GZQ|1|A1|G|2766
6GZQ|1|A1|C|2767
6GZQ|1|A1|A|2768
6GZQ|1|A1|U|2769
6GZQ|1|A1|C|2770
6GZQ|1|A1|U|2771
6GZQ|1|A1|A|2772
6GZQ|1|A1|A|2773
6GZQ|1|A1|G|2774

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain G1

50S ribosomal protein L6

Chain e1

50S ribosomal protein L36