HL_6GZQ_119

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZQ_119 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.3454

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6GZQ|1|A2|C|1295
6GZQ|1|A2|U|1296
6GZQ|1|A2|G|1297
6GZQ|1|A2|C|1298
6GZQ|1|A2|A|1299
6GZQ|1|A2|A|1300
6GZQ|1|A2|C|1301
6GZQ|1|A2|C|1302
6GZQ|1|A2|C|1303
6GZQ|1|A2|G|1304

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain M2

30S ribosomal protein S13

Chain N2

30S ribosomal protein S14 type Z

Chain S2

30S ribosomal protein S19