HL_6H4N_049

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6H4N|1|A|A|2030, 6H4N|1|A|A|2031, 6H4N|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H4N_049 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1287

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.7

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

6H4N|1|A|G|2027
6H4N|1|A|U|2028
6H4N|1|A|G|2029
6H4N|1|A|A|2030
6H4N|1|A|A|2031
6H4N|1|A|G|2032
6H4N|1|A|A|2033
6H4N|1|A|U|2034
6H4N|1|A|G|2035
6H4N|1|A|C|2036

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain R

50S ribosomal protein L21