HL_6H4N_078

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H4N_078 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0898

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6H4N|1|a|A|320
6H4N|1|a|A|321
6H4N|1|a|C|322
6H4N|1|a|U|323
6H4N|1|a|G|324
6H4N|1|a|A|325
6H4N|1|a|G|326
6H4N|1|a|A|327
6H4N|1|a|C|328
6H4N|1|a|A|329
6H4N|1|a|C|330
6H4N|1|a|G|331
6H4N|1|a|G|332
6H4N|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20