HL_6H4N_099

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

6H4N|1|a|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H4N_099 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1064

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30445.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6H4N|1|a|G|1356
6H4N|1|a|A|1357
6H4N|1|a|U|1358
6H4N|1|a|C|1359
6H4N|1|a|A|1360
6H4N|1|a|G|1361
6H4N|1|a|A|1362
6H4N|1|a|A|1363
6H4N|1|a|U|1364
6H4N|1|a|G|1365
6H4N|1|a|C|1366

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14