HL_6HHQ_005

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

6HHQ|1|1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.0425

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6HHQ|1|1|U|194
6HHQ|1|1|U|195
6HHQ|1|1|G|196
6HHQ|1|1|G|197
6HHQ|1|1|A|198
6HHQ|1|1|A|199
6HHQ|1|1|C|200
6HHQ|1|1|A|201

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 9

60S ribosomal protein L26-A

Chain AF

60S ribosomal protein L32

Chain l

60S ribosomal protein L4-A