HL_6HHQ_023
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAUG
- Length
- 7 nucleotides
- Bulged bases
- 6HHQ|1|1|U|1028
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HHQ_023 not in the Motif Atlas
- Homologous match to HL_5TBW_023
- Geometric discrepancy: 0.0867
- The information below is about HL_5TBW_023
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6HHQ|1|1|C|1023
6HHQ|1|1|G|1024
6HHQ|1|1|A|1025
6HHQ|1|1|A|1026
6HHQ|1|1|A|1027
6HHQ|1|1|U|1028
6HHQ|1|1|G|1029
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain Q
- 40S ribosomal protein S15
- Chain g
- Ubiquitin-40S ribosomal protein S31
- Chain i
- Suppressor protein STM1
- Chain s
- 60S ribosomal protein L11-B
Coloring options: