HL_6HHQ_035

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_035 not in the Motif Atlas

Homologous match to HL_5TBW_036

Geometric discrepancy: 0.0559

The information below is about HL_5TBW_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6HHQ|1|1|G|1634
6HHQ|1|1|G|1635
6HHQ|1|1|U|1636
6HHQ|1|1|A|1637
6HHQ|1|1|A|1638
6HHQ|1|1|C|1639

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L27-A

Chain AH

60S ribosomal protein L34-A