HL_6HHQ_090

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_090 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.0754

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6HHQ|1|A|A|520
6HHQ|1|A|A|521
6HHQ|1|A|U|522
6HHQ|1|A|G|523
6HHQ|1|A|U|524
6HHQ|1|A|A|525
6HHQ|1|A|A|526
6HHQ|1|A|A|527
6HHQ|1|A|U|528
6HHQ|1|A|A|529
6HHQ|1|A|C|530
6HHQ|1|A|C|531
6HHQ|1|A|U|532

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain K

40S ribosomal protein S9-A

Chain Z

40S ribosomal protein S24-A