HL_6HHQ_092

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

6HHQ|1|A|U|718, 6HHQ|1|A|U|719, 6HHQ|1|A|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HHQ|1|A|G|703
6HHQ|1|A|C|704
6HHQ|1|A|U|705
6HHQ|1|A|A|706
6HHQ|1|A|A|707
6HHQ|1|A|C|708
6HHQ|1|A|C|709
6HHQ|1|A|U|710
6HHQ|1|A|U|711
6HHQ|1|A|G|712
6HHQ|1|A|A|713
6HHQ|1|A|G|714
6HHQ|1|A|U|715
6HHQ|1|A|C|716
6HHQ|1|A|C|717
6HHQ|1|A|U|718
6HHQ|1|A|U|719
6HHQ|1|A|G|720
6HHQ|1|A|U|721
6HHQ|1|A|G|722
6HHQ|1|A|G|723
6HHQ|1|A|C|724
6HHQ|1|A|U|725
6HHQ|1|A|C|726
6HHQ|1|A|U|727
6HHQ|1|A|U|728
6HHQ|1|A|G|729
6HHQ|1|A|G|730
6HHQ|1|A|C|731
6HHQ|1|A|G|732
6HHQ|1|A|A|733
6HHQ|1|A|A|734
6HHQ|1|A|C|735

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A