HL_6HHQ_122

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_122 not in the Motif Atlas

Homologous match to HL_5TBW_010

Geometric discrepancy: 0.0715

The information below is about HL_5TBW_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6HHQ|1|AR|A|357
6HHQ|1|AR|G|358
6HHQ|1|AR|U|359
6HHQ|1|AR|G|360
6HHQ|1|AR|A|361
6HHQ|1|AR|U|362

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L4-A

Chain DL

60S ribosomal protein L37-A

Chain DN

60S ribosomal protein L39