HL_6HHQ_135

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

6HHQ|1|AR|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_135 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.1736

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6HHQ|1|AR|C|1023
6HHQ|1|AR|G|1024
6HHQ|1|AR|A|1025
6HHQ|1|AR|A|1026
6HHQ|1|AR|A|1027
6HHQ|1|AR|U|1028
6HHQ|1|AR|G|1029

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CM

60S ribosomal protein L11-B

Chain c5

40S ribosomal protein S15

Chain sM

Suppressor protein STM1