HL_6HHQ_166

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6HHQ|1|AR|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_166 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.0856

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6HHQ|1|AR|C|2616
6HHQ|1|AR|U|2617
6HHQ|1|AR|G|2618
6HHQ|1|AR|G|2619
6HHQ|1|AR|G|2620
6HHQ|1|AR|G|2621
6HHQ|1|AR|C|2622
6HHQ|1|AR|G|2623
6HHQ|1|AR|G|2624

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L10

Chain DD

60S ribosomal protein L29