HL_6HHQ_188

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

6HHQ|1|AT|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_188 not in the Motif Atlas

Geometric match to HL_5TBW_076

Geometric discrepancy: 0.1672

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6HHQ|1|AT|G|124
6HHQ|1|AT|U|125
6HHQ|1|AT|A|126
6HHQ|1|AT|U|127
6HHQ|1|AT|U|128
6HHQ|1|AT|C|129

Current chains

Chain AT

5.8S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA