HL_6HHQ_189

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

6HHQ|1|sR|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_189 not in the Motif Atlas

Homologous match to HL_4V88_186

Geometric discrepancy: 0.0392

The information below is about HL_4V88_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.2

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6HHQ|1|sR|G|7
6HHQ|1|sR|U|8
6HHQ|1|sR|U|9
6HHQ|1|sR|G|10
6HHQ|1|sR|A|11
6HHQ|1|sR|U|12
6HHQ|1|sR|C|13
6HHQ|1|sR|C|14
6HHQ|1|sR|U|15
6HHQ|1|sR|G|16
6HHQ|1|sR|C|17

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain s2

40S ribosomal protein S2