HL_6HHQ_192

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

6HHQ|1|sR|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_192 not in the Motif Atlas

Homologous match to HL_4V88_189

Geometric discrepancy: 0.4028

The information below is about HL_4V88_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6HHQ|1|sR|C|190
6HHQ|1|sR|C|191
6HHQ|1|sR|U|192
6HHQ|1|sR|U|193
6HHQ|1|sR|U|194
6HHQ|1|sR|G|195

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain s8

40S ribosomal protein S8-A