3D structure

PDB id
6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound C45 bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
ACAGGGCCCAUUCGGGUCUUGU
Length
22 nucleotides
Bulged bases
6HHQ|1|sR|C|495
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6HHQ_200 not in the Motif Atlas
Homologous match to HL_8P9A_202
Geometric discrepancy: 0.1581
The information below is about HL_8P9A_202
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HHQ|1|sR|A|483
6HHQ|1|sR|C|484
6HHQ|1|sR|A|485
6HHQ|1|sR|G|486
6HHQ|1|sR|G|487
6HHQ|1|sR|G|488
6HHQ|1|sR|C|489
6HHQ|1|sR|C|490
6HHQ|1|sR|C|491
6HHQ|1|sR|A|492
6HHQ|1|sR|U|493
6HHQ|1|sR|U|494
6HHQ|1|sR|C|495
6HHQ|1|sR|G|496
6HHQ|1|sR|G|497
6HHQ|1|sR|G|498
6HHQ|1|sR|U|499
6HHQ|1|sR|C|500
6HHQ|1|sR|U|501
6HHQ|1|sR|U|502
6HHQ|1|sR|G|503
6HHQ|1|sR|U|504

Current chains

Chain sR
18S ribosomal RNA

Nearby chains

Chain e0
40S ribosomal protein S30-A
Chain s9
40S ribosomal protein S9-A

Coloring options:


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