HL_6HHQ_222

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

6HHQ|1|sR|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_222 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.0933

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6HHQ|1|sR|G|1594
6HHQ|1|sR|U|1595
6HHQ|1|sR|C|1596
6HHQ|1|sR|A|1597
6HHQ|1|sR|U|1598
6HHQ|1|sR|C|1599
6HHQ|1|sR|A|1600
6HHQ|1|sR|G|1601
6HHQ|1|sR|C|1602

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain c8

40S ribosomal protein S18-A

Chain c9

40S ribosomal protein S19-A

Chain d0

40S ribosomal protein S20

Chain d9

40S ribosomal protein S29-A