HL_6HHQ_230

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

6HHQ|1|AR|U|545, 6HHQ|1|AR|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HHQ_230 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.2262

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HHQ|1|AR|G|542
6HHQ|1|AR|C|543
6HHQ|1|AR|C|544
6HHQ|1|AR|U|545
6HHQ|1|AR|C|546
6HHQ|1|AR|G|547
6HHQ|1|AR|G|548
6HHQ|1|AR|U|549

Current chains

Chain AR

25S ribosomal RNA

Nearby chains