HL_6HHQ_231

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAUUUUAUGCAGG

Length

15 nucleotides

Bulged bases

6HHQ|1|AR|U|1567, 6HHQ|1|AR|U|1568

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HHQ|1|AR|C|1563
6HHQ|1|AR|U|1564
6HHQ|1|AR|G|1565
6HHQ|1|AR|A|1566
6HHQ|1|AR|U|1567
6HHQ|1|AR|U|1568
6HHQ|1|AR|U|1569
6HHQ|1|AR|U|1570
6HHQ|1|AR|A|1571
6HHQ|1|AR|U|1572
6HHQ|1|AR|G|1573
6HHQ|1|AR|C|1574
6HHQ|1|AR|A|1575
6HHQ|1|AR|G|1576
6HHQ|1|AR|G|1577

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AT

5.8S ribosomal RNA; 5.8S rRNA

Chain CJ

60S ribosomal protein L8-A

Chain CZ

60S ribosomal protein L25